Determining Membrane Orientation of Transmembrane Proteins

Input structure

Input file (cif/pdb or cif.gz/pdb.gz):

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Search for curved membrane

Fragment analysis

Double membrane

Minimum of membrane half thickness

Maximum of membrane half thickness

Lower qValue

Higher qValue

Minimum ratio of helix

Minimum depth

Minimum loop content

Minimum length

Maximum angle

Minimum of average ASA

Minimum of hydrophobicity momentum

Boost angle for α-helices

Boost angle for β-sheets

Boost surface fustration energy

TM minimum length

Straigth penalty

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